Publications
- Brzoska R.M., R.E. Edelmann and A. Bollmann (2022) Physiological and genomic characterization of two novel Bacteroidota strains Asinibacterium spp. OR43 and OR53. Bacteria 1:33-47. (PDF)
- French, E.*, J.A. Kozlowski**, and A. Bollmann (2021) Competition between ammonia-oxidizing archaea and bacteria from freshwater environments. Applied and Environmental Microbiology 87:e01038-21. (PDF)
- Qin, W., Y. Zheng, F. Zhao, Y. Wang, H. Urakawa, W. Martens-Habbena, H. Liu, X. Huang, X. Zhang, T. Nakagawa, D. R. Mende, A. Bollmann, B. Wang, Y. Zhang, S.A. Amin, J.L. Nielsen, K. Mori, R. Takahashi, E.V. Armbrust, M.-K.H. Winkler, E.F. DeLong, M. Li, P.H. Lee, J. Zhou, C. Zhang, T. Zhang, D.A. Stahl and A.E. Ingalls (2020) Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea. ISME Journal 14: 2595-2609. (PDF)
- Sedlacek, C.J.*, B. McGowan**, Y. Suwa, L. Sayavedra-Soto, H.J. Laanbroek, L.Y. Stein, J.M. Norton, M.G. Klotz and A. Bollmann (2019) A physiological and genomic comparison of Nitrosomonas cluster 6a and 7 ammonia-oxidizing bacteria. Microbial Ecology 78: 985-994. (PDF)
- Straka, L.L., K.A. Meinhardt, A. Bollmann, D.A. Stahl and M.K.H. Winkler (2019) Affinity informs environmental cooperation between ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (Anammox) bacteria. ISME Journal, 13 (8): 1997-2004. (PDF)
- Brzoska, R.M.*, M. Huntemann, A. Clum, A. Chen, N. Kyrpides, K. Palaniappan, N. Ivanova, N. Mikhailiva, G. Ovchinnikova, N. Varghese, S. Mukherjee, T.B.K. Reddy, C. Daum, N. Shapiro, T. Woyke and A. Bollmann (2019) Complete genome sequence for Asinibacterium sp. strain OR53 and draft genome sequence for Asinibacterium sp. strain OR43, two bacteria tolerant to uranium. Microbiology Resource Announcements 8:e01701-18. (PDF)
- Rice, M.C., J.M. Norton, L.Y. Stein, J. Kozlowski, A. Bollmann, M. G. Klotz, L. Sayavedra-Soto, N. Shapiro, L.A. Goddwin, M. Huntmann, A. Clum, M. Pillay, N. Vargese, N. Mikhailova, K. Paraniappan, N. Ivanova, S. Mukherjee, T.B.K. Reddy, C. Yee Ngan, C. Saum, N. Kyrpides and T. Woyke (2017) Complete genome sequence of Nitrosomonas cryotolerans ATCC 49181, a phylogenetically distinct ammonia-oxidizing bacterium isolated from Arctic waters. Genome announcements 5: e00011-17. (PDF)
- Sedlacek, C.J.*, S. Nielsen, K. D. Greis, W. D. Haffey, N.P. Revsbech, T. Ticak, H. J. Laanbroek, and A. Bollmann (2016) The effect of bacterial community members on the proteome of the ammonia-oxidizing bacterium Nitrosomonas sp. Is79. Applied and Environmental Microbiology 82: 4776-4788. (PDF)
- Rice, M.C., J.M. Norton, F. Valois, A. Bollmann, P.J. Bottomley, M.G. Klotz, H.J. Laanbroek, Y. Suwa, L.Y. Stein, L. Sayavedra-Soto, T. Woyke, N. Shapiro, L.A. Goodwin, M. Huntemann, A. Clum, M. Pillay, N. Kyrpides, N. Varghese, N. Mikhailova, V. Markowitz, K. Palaniappan, N. Ivanova, D. Stamatis, T.B.K. Reddy, C.Y. Ngan, and C. Daum (2016) Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soils. Standards in Genomic Sciences 11:46. (PDF)
- Brzoska, R.M.* and A. Bollmann (2016) The long-term effect of uranium and pH on the community composition of an artificial consortium. FEMS Microbiol Ecol, fiv158. (PDF)
- French, E.* and A. Bollmann (2015) Freshwater ammonia-oxidizing Archaea retain amoA mRNA and 16S rRNA during ammonia starvation. Life 5(2): 1396-1404. (PDF)
- Bollmann, A., G.S. Bullerjahn, and R.M. McKay (2014) Abundance and diversity of ammonia-oxidizing archaea and bacteria in sediments of the trophic end members of the Laurentian Great Lakes, Erie and Superior. PLOS One 9(5): e97068. (PDF)
- Schmidt, M.A., A.J. Kreinberg, J.M. Gonzalez, J.J. Halvorson, E. French*, A. Bollmann, and A.E. Hagerman (2013) Soil microbial communities respond differently to three chemically defined polyphenols. Plant physiology and Biochemistry, 72: 190-197.
- Utturkar, S.M., A. Bollmann, R.M. Brzoska*, D.M. Klingeman, S.S. Epstein, A.V. Palumbo and S.D. Brown (2013) Draft genome sequence for Caulobacter sp. strain OR37, a bacterium tolerant to heavy metals. Genome Announcements 1(3):e00322-13. (doi:10.1128/genomeA.00322-13). (PDF)
- Utturkar, S.M., A. Bollmann, R.M. Brzoska*, D.M. Klingeman, S.S. Epstein, A.V. Palumbo and S.D. Brown (2013) Draft genome sequence for Ralstonia sp. strain OR214, a bacterium with potential for bioremediation. Genome Announcements 1(3):e00321-13. (PDF)
- Bollmann, A., C.J. Sedlacek*, J. Norton, H.J. Laanbroek, Y. Suwa, L.Y. Stein, M.G. Klotz, D. Arp, L. Sayavedra-Soto, M. Lu, D. Bruce, C. Detter, R. Tapia, J. Han, T. Woyke, S.M. Lucas, S. Pitluck, L. Pennacchio, M. Nolan, M.L. Land, M. Huntemann, S. Deshpande, C. Han, A. Chen, N. Kyrpides, K. Mavromatis, V. Markowitz, E. Szeto, N. Ivanova, N. Mikhailova, I. Pagani, A. Pati, L. Peters, G. Ovchinnikova, and L.A. Goodwin (2013) Genome sequence of Nitrosomonas sp. Is79 - an ammonia-oxidizing bacterium adapted to low ammonium concentrations. Standards in Genomic Sciences 7: 469-482. (PDF)
- French, E.*, J.A. Kozlowski**, M. Mukherjee, G. Bullerjahn and A. Bollmann (2012) Eco-physiological Characterization of Ammonia-oxidizing Archaea and Bacteria from Freshwater. Applied and Environmental Microbiology 78: 5773-5780. (PDF)
- Suwa, Y. , J.M. Norton, A. Bollmann, M.G. Klotz, L.Y. Stein, H.J. Laanbroek, D.J. Arp, L.A. Goodwin, O. Chertkov, B. Held, D. Bruce, J.C. Detter, J.C. Detter, R. Tapia, and C.S. Han (2011) Genome sequence of Nitrosomonas sp. Strain AL212, an ammonia-oxidizing bacterium sensitive to high levels of ammonia. Journal of Bacteriology 193: 5047-5048. (PDF)
- Laanbroek, H.J. and A. Bollmann (2011) Nitrification in inland waters. In: Nitrification, Eds. B.B. Ward, D.J. Arp, and M. G. Klotz. ASM press, Washington DC. pp: 385-403
- Bollmann, A., E. French*, and H.J. Laanbroek (2011) Isolation, Cultivation, and Characterization of Ammonia-Oxidizing Bacteria and Archaea adapted to low ammonium concentrations. In: Methods in Enzymology, Vol. 486. Ed: M.G. Klotz. Academic press, Burlington. pp: 55 - 88.
- Bollmann, A., A.V. Palumbo, K. Lewis, and S. Epstein (2010) Isolation and physiology of bacteria from contaminated subsurface sediments. Applied and Environmental Microbiology 76: 7413-7419. (PDF)
- Bernhard, A. and A. Bollmann (2010) Estuarine Nitrifiers: New Players, Patterns and Processes. Estuarine, Coastal and Shelf Sciences 88:1-11.
- Gavrish, E., A. Bollmann, S. Epstein and K.Lewis (2008) A trap for in situ cultivation of filamentous Actinobacteria. Journal of microbiological Methods 72/3: 257-262.
- Bollmann, A., K. Lewis and S.S. Epstein (2007) Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates. Applied and Environmental Microbiology 73: 6386-6390. (PDF)
- Bollmann, A. (2006) Nitrification. In: Microbiological Methods for Assessing Soil Quality. Eds: Bloem, J., Hopkins, D.W. and A. Benedetti. CABI publishing. pp: 136-141.
- Nielsen, M., A. Bollmann, O. Sliekers, M. Strous, M.S.M. Jetten, M. Schmid, I. Schmidt, L.H. Larsen, L.P. Nielsen, and N. P. Revsbech (2005) Kinetics, diffusional limitation and microscale distribution of chemistry and organisms in a CANON reactor. FEMS Microbiology Ecology 51: 247-256.
- Bollmann, A., I. Schmidt, A.M. Saunders, and M.H. Nicolaisen (2005) Influence of starvation on the potential ammonia-oxidizing activity and amoA mRNA of Nitrosospira briensis. Applied and Environmental Microbiology 71: 1276-1282. (PDF)
- Bollmann, A. and N.P. Revsbech (2005) An NH4+ biosensor based on ammonia-oxidizing bacteria for use under anoxic conditions. Sensors and Actuators B 105: 412-418.
- Bollmann, A., M.-J. Bär-Gilissen, and H.J. Laanbroek (2002) Growth at low ammonium concentrations and starvation response as potential factors involved in niche differentiation among ammonia-oxidizing bacteria. Applied and Environmental Microbiology 68: 4751-4757. (PDF)
- Bollmann, A. and H.J. Laanbroek (2002) Influence of oxygen partial pressure and salinity on the community composistion of the ammonia-oxidizing bacteria in the Schelde estuary. Aquatic Microbial Ecology 28: 239-247.
- Bollmann, A. and H.J. Laanbroek (2001) Continuous culture enrichments of ammonia-oxidizing bacteria at low ammonium concentrations. FEMS Microbiology Ecology 37: 211-221.
- Bollmann, A., M. Koschorreck, K. Meuser and R. Conrad (1999) Comparison of two methods to measure the nitric oxide turnover in soils. Biology Fertility Soils 29: 104-110.
- Bollmann, A. and R. Conrad (1998) Influence of O2 availability on NO and N2O release by nitrification and denitrification in soils. Global Change Biology 4: 387-396.
- Bollmann, A. and R. Conrad (1997a) Recovery of nitrification and production of NO and N2O after exposure of soil to acetylene. Biology Fertility Soils 25: 41-46.
- Bollmann, A. and R. Conrad (1997b) Enhancement by acetylene of the decomposition of nitric oxide in soil. Soil Biology Biochemistry 29/7: 1057-1066.
- Bollmann, A. and R. Conrad (1997c) Acetylene blockage technique leads to underestimation of denitrification rates in oxic soils due to scavenging of intermediate nitric oxide. Soil Biology Biochemistry 29/7: 1067-1077
* Graduate students in the lab, ** Undergraduate students in the lab